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2025
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Fecal microbial load is a major determinant of gut microbiome variation and a confounder for disease associations
Suguru Nishijima, Evelina Stankevic, Oliver Aasmets, and 31 more authors
Cell, Jan 2025
2024
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Multi-biome analysis identifies distinct gut microbial signatures and their crosstalk in ulcerative colitis and Crohn’s disease
Shintaro Akiyama, Suguru Nishijima†, Yasushi Kojima, and 10 more authors
Nature Communications, Nov 2024
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Opportunities and barriers in omics-based biomarker discovery for steatotic liver diseases
Maja Thiele, Ida Falk Villesen, Lili Niu, and 27 more authors
Journal of Hepatology, Aug 2024
2023
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Sphingolipids Are Depleted in Alcohol-Related Liver Fibrosis
Maja Thiele, Tommi Suvitaival, Kristina Trošt, and 29 more authors
Gastroenterology, Jun 2023
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Consistency across multi-omics layers in a drug-perturbed gut microbial community
Sander Wuyts*, Renato Alves*, Maria Zimmermann-Kogadeeva*, and 19 more authors
Molecular Systems Biology, Jul 2023
2022
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Extensive gut virome variation and its associations with host and environmental factors in a population-level cohort
Suguru Nishijima*, Naoyoshi Nagata*, Yuya Kiguchi, and 11 more authors
Nature Communications, Sep 2022
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Metagenomic Identification of Microbial Signatures Predicting Pancreatic Cancer From a Multinational Study
Naoyoshi Nagata*, Suguru Nishijima*, Yasushi Kojima, and 25 more authors
Gastroenterology, Mar 2022
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Population-level metagenomics uncovers distinct effects of multiple medications on the human gut microbiome
Naoyoshi Nagata*, Suguru Nishijima*, Tohru Miyoshi-Akiyama, and 15 more authors
Gastroenterology, Jul 2022
2021
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Long-read metagenomics of multiple displacement amplified DNA of low-biomass human gut phageomes by SACRA pre-processing chimeric reads
Yuya Kiguchi, Suguru Nishijima, Naveen Kumar, and 2 more authors
DNA Research, Sep 2021
2020
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Emergence of the novel aminoglycoside acetyltransferase variant Aac(6’)-ib-d179y and acquisition of colistin heteroresistance in carbapenem-resistant Klebsiella pneumoniae due to a disrupting mutation in the DNA repair enzyme muts
Takuya Sato, Takashi Wada, Suguru Nishijima, and 5 more authors
mBio, Dec 2020
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Revealing the microbial assemblage structure in the human gut microbiome using latent Dirichlet allocation
Shinichiro Hosoda, Suguru Nishijima, Taku Fukunaga, and 2 more authors
Microbiome, Dec 2020
2019
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Effects of storage temperature, storage time, and Cary-Blair transport medium on the stability of the gut microbiota
Naoyoshi Nagata, Mari Tohya, Fumihiko Takeuchi, and 10 more authors
Drug Discoveries & Therapeutics, Oct 2019
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Long-read metagenomic exploration of extrachromosomal mobile genetic elements in the human gut
Yoshihiko Suzuki*, Suguru Nishijima*, Yoshikazu Furuta, and 5 more authors
Microbiome, Aug 2019
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Effects of bowel preparation on the human gut microbiome and metabolome
Naoyoshi Nagata, Mari Tohya, Shinji Fukuda, and 16 more authors
Scientific Reports, Mar 2019
2018
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Collaborative environmental DNA sampling from petal surfaces of flowering cherry Cerasus × yedoensis ’Somei-yoshino’ across the Japanese archipelago
Takahiro Ohta, Takeshi Kawashima, Naoaki O. Shinozaki, and 20 more authors
Journal of Plant Research, Jun 2018
2017
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Circadian oscillations of microbial and functional composition in the human salivary microbiome
Lena Takayasu, Wataru Suda, Kageyasu Takanashi, and 8 more authors
DNA Research, Jun 2017
2016
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Nitrogen fixation and nifH diversity in human gut microbiota
Katsura Igai, Manabu Itakura, Suguru Nishijima, and 20 more authors
Scientific Reports, Aug 2016
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The gut microbiome of healthy Japanese and its microbial and functional uniqueness
Suguru Nishijima, Wataru Suda, Kenshiro Oshima, and 4 more authors
DNA Research, Mar 2016